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RAG and Tool Integration Blueprint

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Linked challenge: MCP-Enabled Drug Design Agent

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Linked challenge
MCP-Enabled Drug Design Agent

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Detail the LlamaIndex RAG pipeline setup, including chosen vector database and indexing strategy for scientific papers. Explain how MCP will be implemented to connect the SimulationAnalyst agent to a mock external scientific simulation API. Provide pseudocode for the MCP adapter.

Adaptation plan

Keep the source stable, then change the prompt in a predictable order so the next run is easier to evaluate.

Keep stable

Preserve the role framing, objective, and reporting structure so comparison runs stay coherent.

Tune next

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Verify after

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