High-Throughput Molecular Search with Pinecone

implementationChallenge

Prompt Content

Develop a strategy for storing and retrieving molecular embeddings and properties in Pinecone. Explain your choice of embedding method (e.g., ECFP, MolBERT) and how you will structure your Pinecone index. Implement a mechanism for the 'Chemist Agent' to perform rapid similarity searches in Pinecone to identify known compounds with similar scaffolds or desirable properties, aiding in lead diversification or repurposing.

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