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Linked challenge: Automate Gestational Phenotype GWAS Analysis with Hail and LlamaIndex
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Linked challenge
Automate Gestational Phenotype GWAS Analysis with Hail and LlamaIndex
Prompt source
Original prompt text with formatting preserved for inspection.
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Using `hail` and `llamaindex`, load gestational phenotype summary statistics and build a query engine that retrieves context-specific lead variants.
Adaptation plan
Keep the source stable, then change the prompt in a predictable order so the next run is easier to evaluate.
Keep stable
Hold the task contract and output shape stable so generated implementations remain comparable.
Tune next
Update libraries, interfaces, and environment assumptions to match the stack you actually run.
Verify after
Test failure handling, edge cases, and any code paths that depend on hidden context or secrets.