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OpenAI OMOP Mapping Agent Setup
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Linked challenge: Precision Oncology EHR Matching and OMOP Mapping with OpenAI Agents SDK
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Linked challenge
Precision Oncology EHR Matching and OMOP Mapping with OpenAI Agents SDK
Prompt source
Original prompt text with formatting preserved for inspection.
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Write a Python script using OpenAI Agents SDK that defines an OMOPMapperAgent with function calling tools to look up concept IDs in OHDSI Athena.
Adaptation plan
Keep the source stable, then change the prompt in a predictable order so the next run is easier to evaluate.
Keep stable
Hold the task contract and output shape stable so generated implementations remain comparable.
Tune next
Update libraries, interfaces, and environment assumptions to match the stack you actually run.
Verify after
Test failure handling, edge cases, and any code paths that depend on hidden context or secrets.