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Construct PyTorch Model for Chromatin Binding
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Linked challenge: Pioneer Factor Cohesin Chromatin Binding Predictor with PyTorch
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Linked challenge
Pioneer Factor Cohesin Chromatin Binding Predictor with PyTorch
Prompt source
Original prompt text with formatting preserved for inspection.
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Write a Python script using `torch` defining a `nn.Module` class that processes 1000bp one-hot encoded DNA sequences and outputs cohesin binding logits.
Adaptation plan
Keep the source stable, then change the prompt in a predictable order so the next run is easier to evaluate.
Keep stable
Hold the task contract and output shape stable so generated implementations remain comparable.
Tune next
Update libraries, interfaces, and environment assumptions to match the stack you actually run.
Verify after
Test failure handling, edge cases, and any code paths that depend on hidden context or secrets.