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Linked challenge: Implement a Single-Cell Epigenomic Cell-State Triage with Scanpy and AnnData
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Linked challenge
Implement a Single-Cell Epigenomic Cell-State Triage with Scanpy and AnnData
Prompt source
Original prompt text with formatting preserved for inspection.
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Using `scanpy` and `anndata`, build a clustering pipeline that ingests single-cell expression matrices and identifies drug-resistant cell sub-populations.
Adaptation plan
Keep the source stable, then change the prompt in a predictable order so the next run is easier to evaluate.
Keep stable
Hold the task contract and output shape stable so generated implementations remain comparable.
Tune next
Update libraries, interfaces, and environment assumptions to match the stack you actually run.
Verify after
Test failure handling, edge cases, and any code paths that depend on hidden context or secrets.