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Extract ProtT5 Embeddings for IDR Prediction
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Linked challenge: Intrinsically Disordered Region (IDR) Demethylase Target Predictor with BioEmbeddings
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Linked challenge
Intrinsically Disordered Region (IDR) Demethylase Target Predictor with BioEmbeddings
Prompt source
Original prompt text with formatting preserved for inspection.
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0 checklist items
Write a Python script using `bioembeddings` to generate ProtT5 embeddings for input protein FASTA sequences and pass them to a PyTorch classifier.
Adaptation plan
Keep the source stable, then change the prompt in a predictable order so the next run is easier to evaluate.
Keep stable
Hold the task contract and output shape stable so generated implementations remain comparable.
Tune next
Update libraries, interfaces, and environment assumptions to match the stack you actually run.
Verify after
Test failure handling, edge cases, and any code paths that depend on hidden context or secrets.