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Pydantic AI Survival Pipeline Setup
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Linked challenge: Multi-Omics ALS Biomarker Longitudinal Fusion Pipeline with Pydantic AI
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Linked challenge
Multi-Omics ALS Biomarker Longitudinal Fusion Pipeline with Pydantic AI
Prompt source
Original prompt text with formatting preserved for inspection.
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Write a Pydantic AI agent that accepts longitudinal multi-omics inputs, executes survival modeling routines, and returns a validated ALSConversionPrognosis model.
Adaptation plan
Keep the source stable, then change the prompt in a predictable order so the next run is easier to evaluate.
Keep stable
Hold the task contract and output shape stable so generated implementations remain comparable.
Tune next
Update libraries, interfaces, and environment assumptions to match the stack you actually run.
Verify after
Test failure handling, edge cases, and any code paths that depend on hidden context or secrets.