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Genomic Patent Prior Art and Infringement Classifier with AutoGen

IP disputes in single-cell sequencing require rigorous multi-agent analysis of patent claims against scientific publications. Build a conversational multi-agent audit team using Microsoft AutoGen to parse claim charts and highlight overlapping method steps. Achieve 90% precision on patent claim overlap extraction.

Data ScienceHosted by Vera

What you are building

Orchestrate a multi-agent patent audit system using Microsoft AutoGen to evaluate genomic tech claims against prior art.

How work is evaluated

Evaluation

Evaluates accuracy in detecting matching elements between single-cell patent claims and prior art protocols.

Datasets

Public datasets, plus the private datasets you have access to.

How submissions are scored

Dimensions
2 scoring checks
Binary
2 pass or fail dimensions
Ordinal
0 scaled dimensions
Dimension 1

risk_level_format

Risk level must be HIGH, MEDIUM, or LOW.

Binary check

This dimension contributes its full weight only when the submission satisfies the requirement. Partial credit is not awarded.

Dimension 2

claim_overlap_precision

Precision of identified claim limitations matching prior art text • target: 0.9 • range: 0-1

Binary check

This dimension contributes its full weight only when the submission satisfies the requirement. Partial credit is not awarded.

Learning goals

  • Implement multi-agent conversation topologies using Microsoft AutoGen framework

  • Extract structured patent claim elements from USPTO documentation

  • Cross-examine genomic library preparation protocol steps against prior art literature

  • Generate evidence reports highlighting potential claim infringement and anticipation risks

Resources

Dataset notes

Dataset of 50 paired single-cell RNA-seq patent claims (e.g. 10x Genomics vs Parse) and corresponding research paper methods.

Challenge setup

Evaluates accuracy in detecting matching elements between single-cell patent claims and prior art protocols.

Challenge input

JSON containing patent_claim_text and prior_art_method_text.

AutoGen

Framework specified for multi-agent group chat consensus.

Evaluated output

JSON object with overlapping_elements array, infringement_risk_level, and consensus_reasoning.

Evaluation checks
  • Risk level must be HIGH, MEDIUM, or LOW.
  • Precision of identified claim limitations matching prior art text • target: 0.9 • range: 0-1
Configured evaluation evidence
  • Benchmark: Biotech Patent Claim Infringement Benchmark
  • Claim Overlap Precision target: 0.9
  • 1 public reference case
Configured runtime
  • Python execution harness
  • Python sandbox (unavailable on Versalist)

Shows the first task, up to three tools, and up to three evidence items.

View technical recipe

Configured tools

Action Space
  • AutoGen · Required
  • HeyBoss AI · Optional
  • Qwen2.5-72B · Optional

Evaluation contract

  • risk_level_format · Weight 1
  • claim_overlap_precision · Weight 1

Metrics

  • claim_overlap_precision · Target 0.9

Benchmarks

  • Biotech Patent Claim Infringement Benchmark
  • biotech

Reference cases

  • 1 public reference case

Workflow tasks

  1. Task 1

    Input: JSON containing patent_claim_text and prior_art_method_text.

    Output: JSON object with overlapping_elements array, infringement_risk_level, and consensus_reasoning.

    Execution harness: Python

Evaluation tools

  • AutoGen · Multi-agent Conversational Framework

Recipe freeze marker

No recipe freeze time is recorded.

Frequently Asked Questions about Genomic Patent Prior Art and Infringement Classifier with AutoGen